rs30399309 SNP Detail

Summary

• ID
  rs30399309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152634333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTCAAAA TCGTAGCTGA
  AGACCCCACA GAGGATTTCT AAAGGGCGAG GTGCCTTTCC TTTCTTTCTT TTTCTTTTTG
  CTTTGCTTTC TTCTTTTCCC TCCTCTAGAT TCGTCAGAAC TAGCTAGCAA AAGCTCCCCG
  CTTAGCCTGC TAATGACTAT CAGAAATATT CACAGTGTTC CCTGGGTTTC TTCTCTTCTC
  R
  CGTGGTCAGG CTTTAACATG CAGTCCTTAG TCTCAGCCTA ATTACTCACA TTTGAAGCGG
  GAACCTCACA TCTGTCACAA AGCTCTTAGG CCACTTTTAG GAAGGCCTTG CTGTCAACAA
  CAGGAAGTGG GAGGAGGGGT TGGGGGTGGA CTCTCTTATC TCAGACAATA TGTGGAATTG
  CACCTGACTG ACAAAGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45424490	mCV22358389	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss136104948	ENSMUSSNP2099892	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
ss321029242	CHEV_3_152591660	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30399309					SNP	A	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152634333 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm46830	predicted gene, 46830	within coordinates
Gm66995	predicted gene, 66995	198 bp upstream
Rr587627	regulatory region 587627	within coordinates
Rr587628	regulatory region 587628	209 bp proximal
Rr587629	regulatory region 587629	1585 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32427	transcription start site region 32427	193 bp upstream
Tssr32428	transcription start site region 32428	1348 bp upstream