rs30397048 SNP Detail

Summary

• ID
  rs30397048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68400304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCA AGCAAATAGT TTCACATCGC
  R
  TCGAACCTTC TTCCTAAAAA GAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45423199	mCV22642134	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss135263842	ENSMUSSNP6668571	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320791705	CHEV_3_68296893	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30397048					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68400304 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr375142	regulatory region 375142	within coordinates
Rr578004	regulatory region 578004	254 bp distal
Rr578005	regulatory region 578005	747 bp proximal
Rr578006	regulatory region 578006	1128 bp proximal
Rr578007	regulatory region 578007	1180 bp proximal
Schip1	schwannomin interacting protein 1	Intron
Tssr898	transcription start site region 898	1232 bp upstream
Tssr29457	transcription start site region 29457	274 bp upstream
Tssr29458	transcription start site region 29458	1261 bp upstream
Tssr29459	transcription start site region 29459	1312 bp upstream
Tssr33507	transcription start site region 33507	1075 bp downstream