rs30392346 SNP Detail

Summary

• ID
  rs30392346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53496368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTGCCTA CCTGCCTCCT
  GCGTGTTAGG AAAGGGAGGT ACCACCAGGC AGTAAAAATC CTATTTTTAA AATAAAAAAT
  ATTAATATCC AGAGTCCAAA TGTGCCAGGG AAGAGCAGAG AGATTAGTGG GGGAACCTCT
  GTTGATAGGG ACCTAATGTT CACAGGCCAA CAGTCCAGCA CAGTTTCTCA GTAGTAATTT
  Y
  GGAGACAGCC CTTATATTTC TGCCAATGTG TTCCTGCCTC ATCGTTCCCC TCCACAAAGC
  TCTTTTGTGT TTACAGATCC TATTAAGTGG GCGTTTCTCA AAGTGACATC TCTGTGTCAT
  CAAGGGCTTC AGAACTCTAC ACCAACTATA TTTCTGCTTC ATATCTTTCC ATATTTTATG
  GTTATAGGAA ATGAAATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss46944197	NES10829660	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs30392346					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46944197	NES10829660	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53496368 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576723	regulatory region 576723	1213 bp proximal
Rr576724	regulatory region 576724	1301 bp proximal