rs30391237 SNP Detail

Summary

• ID
  rs30391237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:92761376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACACAGA AATAGGAACA
  TATACCCTGA CATCCTTGTG TATCTCTTAT CCCTGCCAGA CGTACCCTGC TCCGCACACA
  TACCAGCCTG AGGCCTTCCA GCCTACATCT TACCTTGGCA TGGATATGCC ACCCATCTTA
  ATGCCTTCTT GGAGACCTTC TTGAGCTTGT ACCCACCCAC AGCTACTGTG CCCGAGTAGG
  Y
  AGGGACTGGC AATGTAGGCA GTGACAAGGG CAGTGAGAGG GCAAAATAAA GAAGCAGAGG
  TGTGGTCCTT CCAGAGAGCC TGGTTCTTAC TACCCTGCAG TTGGGGAATG TGGGGGATTA
  GGAACAAGAC AAGCAAAAGG CTTTGATGTC TGTGAGGACA GCCGTAGATG CCCATCCAGC
  TGGGGTGTGT AGGCACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49630033	NES12942053	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30391237					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49630033	NES12942053	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:92761376 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29481	predicted gene 29481			within coordinates
Gm69848	predicted gene, 69848			12 bp upstream
Gpc1	glypican 1			Intron
				Noncoding-Transcript-Variant
Rr415863	regulatory region 415863			1999 bp distal
Rr415864	regulatory region 415864			264 bp distal
Rr415865	regulatory region 415865			523 bp proximal
Rr415866	regulatory region 415866			737 bp proximal
Tssr8126	transcription start site region 8126			1928 bp downstream
Tssr8127	transcription start site region 8127			1905 bp downstream
Tssr8128	transcription start site region 8128			1865 bp downstream
Tssr8129	transcription start site region 8129			1840 bp downstream
Tssr8130	transcription start site region 8130			1779 bp downstream