rs30390423 SNP Detail

Summary

• ID
  rs30390423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53484181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGAAGAG GGGGTGGTGG
  GATGGGCGTG CGGATCACAT AGCTCCCTTC TGCTGCTGGG AAGACTTCCA TGTTCAGTGA
  TTAGGATGTG GAGATAAAGA AATCTACCCC ATAATAGGAC GAGAATCATC AAATGTTACA
  GCTCATTAGA GCAAGGAAGT CAGGCACCTT GTTTTCCTTT TCTACAGTGC TCAGAATAAT
  Y
  GGTGCCTTGG GATTTCTATT GCTGTGATAA TGACCCAAAG CACCTCGGAG AGGAAAGGGT
  CTATTTCAGT TTACAAGTCT CAGGTCACAC TCCATCCATC ACTGAGGGAA GTCATCACAG
  GATCCTCGAG GCAACAACTA AAGCAGAGGC CATGGAGGAG TGTTGCTTAC TGCCTTACTC
  CCTAAGGCTT GCAGCCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46943906	NES10830473	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30390423					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46943906	NES10830473	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53484181 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576720	regulatory region 576720	within coordinates