rs30390420 SNP Detail

Summary

• ID
  rs30390420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53483938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAGTGT CTGGGGATGA
  GGATGCTCAG TAGTGCACAA TACTTAGGAA AGTCACAGAA AAGTGTTCTT GTAAAGTTGA
  ACTGAGCTGT ACAGGTGGTC ATGAGCCATC TAAGTGAAGG GTCAAGAATT CCAAACAAAG
  GGATTACTGG TGAAAGAGCC CAAGAGCAGG CTGTGCTGAG GGCAGGCAAG GAGCAGGCAG
  Y
  GTCTCCAGAA CAATGGTGGG CGGGTGAGGA GGTCAGACAT GAGGCTGAAG AGGGGGTGGT
  GGGATGGGCG TGCGGATCAC ATAGCTCCCT TCTGCTGCTG GGAAGACTTC CATGTTCAGT
  GATTAGGATG TGGAGATAAA GAAATCTACC CCATAATAGG ACGAGAATCA TCAAATGTTA
  CAGCTCATTA GAGCAAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46943903	NES10830472	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30390420					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46943903	NES10830472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53483938 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576719	regulatory region 576719	1965 bp distal
Rr576720	regulatory region 576720	within coordinates