rs30389622 SNP Detail

Summary

• ID
  rs30389622
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53483526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCCAGAG GTATATGCAG
  CTCTCGTCTA CCTAGAGGTG GTGCAGGCAG TGACCCTCAC TGCCCTGAGC GCACTTCCTG
  TGCCCAGGTT TCAATCCTGC CTTGACCTTT GTAAGGAAAT CTTGAGATTA AGTGCTTTTC
  TAATGACTAA CTTTTCCAGT ATCCTTTGTT TTCCTTCAAG ACTATCTCTG ATATATTCAT
  M
  TTTAGAATAC TCCCATCTTA TAGTGGATTA TTCATCTATT AAACACTGAT TTTAACTTGC
  CAGGCATTAC AAGGGGCCCC GCTGATGCAG AAATGAAGCC CATGCCCTCA TGGGGTTTCC
  CTTCGGGTGG GAGACGGGAA GTAGGAAGAT CGTGATTAAA TACATAAGCA GGTAGGTACA
  TATGATACTG GGGGTGCTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46943894	NES10830469	PERLEGEN	MM_PANEL2	f	SNP	A			A	A	A		A	C		A	A	A
ss135182338	ENSMUSSNP7113597	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30389622					SNP	A	A	A	A	A	A	A	A	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46943894	NES10830469	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53483526 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576719	regulatory region 576719	1553 bp distal
Rr576720	regulatory region 576720	305 bp proximal