rs30388068 SNP Detail

Summary

• ID
  rs30388068
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95290096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCCACCCC CACCTCCTGC CCGGCAGATG TTCTAGGCTT
  GTGGAGTTTC CACCTCTGCT GACACCCTCT GAGACAGGGC TGCTGGGGGG AGGGGAGGGC
  S
  CTTTGTTTAA ATTTGTGGTG TGATAGTGAG TCCATTGACT TTAAAGAGGA AGAGATGAGA
  TCAAAGAACT TGATCGCAAA GGAAAACGTT TTTGGACGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46403529	mCV23074475	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss136828247	ENSMUSSNP2384556	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30388068					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95290096 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	773 bp upstream
Gm35915	predicted gene, 35915	within coordinates
Gm37805	predicted gene, 37805	within coordinates
Rr684789	regulatory region 684789	1899 bp distal
Rr684790	regulatory region 684790	678 bp distal
Rr684791	regulatory region 684791	within coordinates
Tssr86547	transcription start site region 86547	604 bp downstream
Tssr90904	transcription start site region 90904	924 bp upstream
Tssr90905	transcription start site region 90905	852 bp upstream
Tssr90906	transcription start site region 90906	831 bp upstream
Tssr90907	transcription start site region 90907	804 bp upstream
Tssr90908	transcription start site region 90908	767 bp upstream
Tssr90909	transcription start site region 90909	744 bp upstream
Tssr90910	transcription start site region 90910	710 bp upstream
Tssr90911	transcription start site region 90911	682 bp upstream
Tssr90912	transcription start site region 90912	264 bp upstream