rs30386360 SNP Detail

Summary

• ID
  rs30386360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53482265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACGGTTG ATTCTAAAGA
  GAATACAATT ACAGTTGCTA TCATTTTTTT TTTTGCTTCG TTTCTCCTTT TTGATCTGAA
  TCTCTTATGT CAGAAACTGA ACATGACTCT AATAGTTTTT TTTTTTTTCT TTTTCTTTTT
  TAAAAGAACC GTGTCAGGGA GGGGTGGAGA ACTCAGCATA GCTTGGATCT CCAGTCATCA
  Y
  TTTGTTTTCA GTAAACACCG GTGTGCAGTG CTTTTCAATT GCCCTCTTTC ATCTTGGCAG
  CGGAGGGCAT CTTCCCTGGT ATAACCTGAG AGGTAGAAAT GCCCTGCTTT ACAGGACCTT
  GGGATCACAC GGTTGTGCCT GGCTCCCAAG CACAGTCAGG TTGGACCTCA GATCATGTAA
  CTTCTACTCT ACCCAAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46943852	NES10830542	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30386360					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46943852	NES10830542	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53482265 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576719	regulatory region 576719	292 bp distal
Rr576720	regulatory region 576720	1566 bp proximal