rs30384676 SNP Detail

Summary

• ID
  rs30384676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53467932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGGAGA CAATGGGCAA
  TGGGCAGGCT CTGCAGGTCC CTGTAACTGG AGCCTTGTCA TGGAGACATC TGATAAAAGA
  TGTGCTCAAT TGTAACATGG GCAGAAGCCT GCTGGGATGT GCATTTAGAG GTATGGAGGA
  TGGATGGACA GGCTACAGAC AACAAGTGAC AGGCACATAG GAGCCACTTG AAGCTGGCTT
  Y
  GGTGTTGCAT GAGCTATTCT GATGAAGAAA GACGGCATAA GGGTTAAAAC ATAGACATAC
  AAAAATGAAC ATGGATGTGG GGTGGACAGG GAGGGGAAGG AGGGCTGGTA TTGTTGGATG
  CACTCACTAT GATTGAGAAT ATAGGAGAGA GGGGATTGAA GCTAAGAACA CCTGTTGCTC
  TTATGGGAGA TCCAGGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46943477	NES10831446	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30384676					SNP	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46943477	NES10831446	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53467932 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576717	regulatory region 576717	824 bp proximal