rs30382779 SNP Detail

Summary

• ID
  rs30382779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53467173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAATGCAA CCGGACCATG
  TGATGCCGGA TCACCTGACT TACTCTTCTA TCACACTCTC TTTCCTTCTC TGGGGATCAG
  GGCTTCTTGT GTAGGTTCCA AGTGAAGTCA TGTTTTTTTT TTCCTAATTT ACATTCATAT
  AACCTATCCA TGGTTACTTT CTGTGTTCCT TATTAGAAGG CAAATATGAA GAAAATTCTC
  Y
  TAAGTGGGAG TTGAAAAGCC AGTCTTGTCT CATAACTGGC TGGTACCAAA GATGATAAAA
  ATGTAGGGAT TACAGCCTTT ATATCTCGTA TACTCAGTAA CCCACCTTAA AGCTTAAAGT
  CTCCTACACC GGAGACAGCC GTCCTGAGTT TAGGATCTCA CAGACAGTCC TGGCAGAGCC
  CTATATAGGT TGCATTGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46943459	NES10831431	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs30382779					SNP	T	T	T	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46943459	NES10831431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53467173 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576716	regulatory region 576716	1933 bp distal
Rr576717	regulatory region 576717	1583 bp proximal