rs30382776 SNP Detail

Summary

• ID
  rs30382776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53466991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTGGCA GTGGTGCGCA
  GGGGTGGCTG TCAACTCTTC TGGTGGCTTT CCAGTTAGTG TAGCCATGGG AAGAGCCTCC
  CTCCTCCAAG CCCTGAGTGC AGGATCTCTT GGGTCACTGT GCAAAGCCTG ACCTTAAGAG
  AGTCACTTCT CTGAGTCTTG AATTCATGCA CTACAACACA AGGTCAATGC AACCGGACCA
  Y
  GTGATGCCGG ATCACCTGAC TTACTCTTCT ATCACACTCT CTTTCCTTCT CTGGGGATCA
  GGGCTTCTTG TGTAGGTTCC AAGTGAAGTC ATGTTTTTTT TTTCCTAATT TACATTCATA
  TAACCTATCC ATGGTTACTT TCTGTGTTCC TTATTAGAAG GCAAATATGA AGAAAATTCT
  CTTAAGTGGG AGTTGAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46943456	NES10831430	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30382776					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46943456	NES10831430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53466991 () rs orientation: forward

Symbol	Name	Function Class
Frem2	Fras1 related extracellular matrix protein 2	Intron
Rr576716	regulatory region 576716	1751 bp distal
Rr576717	regulatory region 576717	1765 bp proximal
Tssr33271	transcription start site region 33271	1999 bp upstream