rs30379945 SNP Detail

Summary

• ID
  rs30379945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53398316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCCAGAGA ATGTTTTAGA
  ATAGGAAGGG AGAACTCATT GGAAAGCTGT CTCCTGCAGA ACAGAGGCTG CCAGCTTCCA
  CCCATGATTT GACTTCGAGT CGTTTGTTTC GCTCCTCCCA GACCCCCCTC CCTCAGAACC
  CCTCTCCAAG CCAAGGCTGG TCCTTGGCAG TTTATTTTTT TGAGCCAAAT CTGAGTGGGC
  Y
  GTCCTAAATA ATACATTCCA CGGTGGAACG GGTTTTATGG AATGGGTTTT TTTTTAAGAG
  TTACAGTGAA AGAAGAAATT TCTAAATCGA CACATTTCCT AAGCATGTTG GTGGGAGCAT
  CAGGCAGGCA GTTTGCAGAG GAGCAGAGGT GAGGTGTATC AGTCTGTTAA ATGGACTCAA
  TCCGAAAGGT TTGACCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46941815	NES10799981	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30379945					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46941815	NES10799981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53398316 () rs orientation: forward

Symbol	Name	Function Class
Rr576707	regulatory region 576707	912 bp proximal
Rr576708	regulatory region 576708	1026 bp proximal
Stoml3	stomatin (Epb7.2)-like 3	Intron