rs30378123 SNP Detail

Summary

• ID
  rs30378123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53397748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGTCTAA GCAAAATGGT
  AAACGCTGGG ACCTTCAGGA CAGCCCTTAA GGCTGCATAA AAGAACTCTA AAAAATGGGT
  TCAAAGATAT ATAATTTCTC AAAAAATAAG GATGCAATAT GAATTATATG AGGGGCTTCA
  TGAATCTAAA GGAACAAAAG CAGCCGCACC GTGAGCCAGC TTGTCAGAAA GATGCTAAGG
  R
  AGGAGACACA GAGATTTAGG GAGCAGTGAT CACAGGAGAC CCCACCCTGC TAAGGTTTTT
  TCTTTATGCT TACAAAGGTA GAGAGATTCG TGAGCTCAGG GTCAGCCTGG GACCGAGCCA
  GGTTAGGCCG CCCCCCCAAT GTGGTAGAAA TGATAATTTC AGGGTGGGGT CCCATCCAGC
  TAGCTTGGTG TCTGGTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46941803	NES10799973	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30378123					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46941803	NES10799973	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53397748 () rs orientation: forward

Symbol	Name	Function Class
Rr576707	regulatory region 576707	1480 bp proximal
Rr576708	regulatory region 576708	1594 bp proximal
Stoml3	stomatin (Epb7.2)-like 3	Intron
Tssr29119	transcription start site region 29119	1666 bp downstream
Tssr29120	transcription start site region 29120	1613 bp downstream