CATATTTTTA CATTCCTCCT TCAAGGAACA TCCTCCCTCT TATCACTGAC TCCGTGGAAG TCAGAGGCAG CCTGAGGCAG GAGGCAAAGG TGTGGCTAAT K TCTAAGCAAA ATGGTAAACG CTGGGACCTT CAGGACAGCC CTTAAGGCTG CATAAAAGAA CTCTAAAAAA TGGGTTCAAA GATATATAAT TTCTCAAAAA K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46941797 | NES10799969 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | G | G | T | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30378117 | SNP | G | G | G | G | G | G | G | G | G | G | T | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46941797 | NES10799969 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr3:53397552 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr576707 | regulatory region 576707 | 1676 bp proximal | ||||||
Rr576708 | regulatory region 576708 | 1790 bp proximal | ||||||
Stoml3 | stomatin (Epb7.2)-like 3 | Intron | ||||||
Tssr29119 | transcription start site region 29119 | 1470 bp downstream | ||||||
Tssr29120 | transcription start site region 29120 | 1417 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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