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rs30378117 SNP Detail
Summary
  • ID
    rs30378117
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr3:53397552 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CATATTTTTA CATTCCTCCT TCAAGGAACA TCCTCCCTCT
    TATCACTGAC TCCGTGGAAG TCAGAGGCAG CCTGAGGCAG GAGGCAAAGG TGTGGCTAAT
    K
    TCTAAGCAAA ATGGTAAACG CTGGGACCTT CAGGACAGCC CTTAAGGCTG CATAAAAGAA
    CTCTAAAAAA TGGGTTCAAA GATATATAAT TTCTCAAAAA                      
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46941797 NES10799969 PERLEGEN MM_PANEL2 f SNP G G G G G G G G G G T G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs30378117 SNP G G G G G G G G G G T G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46941797 NES10799969 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:53397552 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr576707 regulatory region 576707 1676 bp proximal
Rr576708 regulatory region 576708 1790 bp proximal
Stoml3 stomatin (Epb7.2)-like 3 Intron
Tssr29119 transcription start site region 29119 1470 bp downstream
Tssr29120 transcription start site region 29120 1417 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory