rs30378117 SNP Detail

Summary

• ID
  rs30378117
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53397552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATATTTTTA CATTCCTCCT TCAAGGAACA TCCTCCCTCT
  TATCACTGAC TCCGTGGAAG TCAGAGGCAG CCTGAGGCAG GAGGCAAAGG TGTGGCTAAT
  K
  TCTAAGCAAA ATGGTAAACG CTGGGACCTT CAGGACAGCC CTTAAGGCTG CATAAAAGAA
  CTCTAAAAAA TGGGTTCAAA GATATATAAT TTCTCAAAAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46941797	NES10799969	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30378117					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46941797	NES10799969	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53397552 () rs orientation: forward

Symbol	Name	Function Class
Rr576707	regulatory region 576707	1676 bp proximal
Rr576708	regulatory region 576708	1790 bp proximal
Stoml3	stomatin (Epb7.2)-like 3	Intron
Tssr29119	transcription start site region 29119	1470 bp downstream
Tssr29120	transcription start site region 29120	1417 bp downstream