ATTGCTAGGT CTGGCATGGC CTTGGTAGGG ACAGAATGAC ACGGTTCCTG CCACTGGGAC AGGGTCAGCA GACATGGGAC TCCACCAGTG TCCATGGTGG CTGTGGGCAT AAGGCTTTTT TTAAATAATA ATTACATATT TTTACATTCC TCCTTCAAGG AACATCCTCC CTCTTATCAC TGACTCCGTG GAAGTCAGAG R CAGCCTGAGG CAGGAGGCAA AGGTGTGGCT AATGTCTAAG CAAAATGGTA AACGCTGGGA CCTTCAGGAC AGCCCTTAAG GCTGCATAAA AGAACTCTAA AAAATGGGTT CAAAGATATA TAATTTCTCA AAAAATAAGG ATGCAATATG AATTATATGA GGGGCTTCAT GAATCTAAAG GAACAAAAGC AGCCGCACCG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46941794 | NES10799967 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | A | G | A | A | G | G | A | A | A | A | ||
ss320768462 | CHEV_3_53294019 | CHEVERUD | SCREENING_POP | f | SNP | A | G | ||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
||||
rs30378114 | SNP | G | G | A | G | A | A | G | G | A | A | A | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46941794 | NES10799967 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:53397518 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr576707 | regulatory region 576707 | 1710 bp proximal | ||||||
Rr576708 | regulatory region 576708 | 1824 bp proximal | ||||||
Stoml3 | stomatin (Epb7.2)-like 3 | Intron | ||||||
Tssr29119 | transcription start site region 29119 | 1436 bp downstream | ||||||
Tssr29120 | transcription start site region 29120 | 1383 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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