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rs30378114 SNP Detail
Summary
  • ID
    rs30378114
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:53397518 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTGCTAGGT CTGGCATGGC
    CTTGGTAGGG ACAGAATGAC ACGGTTCCTG CCACTGGGAC AGGGTCAGCA GACATGGGAC
    TCCACCAGTG TCCATGGTGG CTGTGGGCAT AAGGCTTTTT TTAAATAATA ATTACATATT
    TTTACATTCC TCCTTCAAGG AACATCCTCC CTCTTATCAC TGACTCCGTG GAAGTCAGAG
    R
    CAGCCTGAGG CAGGAGGCAA AGGTGTGGCT AATGTCTAAG CAAAATGGTA AACGCTGGGA
    CCTTCAGGAC AGCCCTTAAG GCTGCATAAA AGAACTCTAA AAAATGGGTT CAAAGATATA
    TAATTTCTCA AAAAATAAGG ATGCAATATG AATTATATGA GGGGCTTCAT GAATCTAAAG
    GAACAAAAGC AGCCGCACCG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
ss46941794 NES10799967 PERLEGEN MM_PANEL2 f SNP G G A G A A G G A A A A
ss320768462 CHEV_3_53294019 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
rs30378114 SNP G G A G A A G G A A A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46941794 NES10799967 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:53397518 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr576707 regulatory region 576707 1710 bp proximal
Rr576708 regulatory region 576708 1824 bp proximal
Stoml3 stomatin (Epb7.2)-like 3 Intron
Tssr29119 transcription start site region 29119 1436 bp downstream
Tssr29120 transcription start site region 29120 1383 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory