rs30378114 SNP Detail

Summary

• ID
  rs30378114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53397518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCTAGGT CTGGCATGGC
  CTTGGTAGGG ACAGAATGAC ACGGTTCCTG CCACTGGGAC AGGGTCAGCA GACATGGGAC
  TCCACCAGTG TCCATGGTGG CTGTGGGCAT AAGGCTTTTT TTAAATAATA ATTACATATT
  TTTACATTCC TCCTTCAAGG AACATCCTCC CTCTTATCAC TGACTCCGTG GAAGTCAGAG
  R
  CAGCCTGAGG CAGGAGGCAA AGGTGTGGCT AATGTCTAAG CAAAATGGTA AACGCTGGGA
  CCTTCAGGAC AGCCCTTAAG GCTGCATAAA AGAACTCTAA AAAATGGGTT CAAAGATATA
  TAATTTCTCA AAAAATAAGG ATGCAATATG AATTATATGA GGGGCTTCAT GAATCTAAAG
  GAACAAAAGC AGCCGCACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46941794	NES10799967	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	A	G	G	A		A	A		A
ss320768462	CHEV_3_53294019	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30378114					SNP	G	G	A	G	A	A	G	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46941794	NES10799967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53397518 () rs orientation: forward

Symbol	Name	Function Class
Rr576707	regulatory region 576707	1710 bp proximal
Rr576708	regulatory region 576708	1824 bp proximal
Stoml3	stomatin (Epb7.2)-like 3	Intron
Tssr29119	transcription start site region 29119	1436 bp downstream
Tssr29120	transcription start site region 29120	1383 bp downstream