rs30377631 SNP Detail

Summary

• ID
  rs30377631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:52197727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATATAT GCCTGTAGTA
  CCTACGTGTG TGCAGGAAGA TTTTTTTTTA AGGGAGTAAG AGAGAGAAAG AGAGGGAGAC
  CCAGGAGATA CGTCAGCCAG GATCGAGTCC CTGGTTTTAC AGCGCATTCA GCACGGAGAT
  GCGAGTCATA AACATTTTGT GGGCTTGGCC GAGACTATTA CGACCCAAAT AAATGCACTG
  Y
  ACGGTCTATA TTCACGGCGC TTCGAAGGGT TAGTTTTCTT TTTGCTCTTG TGTTTTCTTT
  CCGAAACCAT CCTACCCCAG AGTCTGATCC CACACACTAG CCGCCTTGCT CTGAAGCTGG
  GGACATCTAG CATTAAAAGT AGCCTGAGAA TGAATGGGGA TTTTTTTTTC TTTCTTCTAG
  CCTCCTCAAC CGGCGACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45923966	mCV22669428	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss133191092	ENSMUSSNP2671434	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30377631					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52197727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17429	CpG island 17429	543 bp proximal
Hoxa7	homeobox A7	Intron
Rr630374	regulatory region 630374	1546 bp distal
Rr630375	regulatory region 630375	1057 bp proximal
Rr630376	regulatory region 630376	1421 bp proximal
Tssr61005	transcription start site region 61005	826 bp downstream