rs30377333 SNP Detail

Summary

• ID
  rs30377333
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19946809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAACTACCAG TGACTTGAAG CCAGGTGATA AACAAACAGG ACCCAGGTTA GTCATGAGCC
  TGCCATGTGC AAAAGAAGCA TGTGCTCTGG CCACACTCAT GGAATTCCAT GGGGAAGCTT
  CAGGAAAACT TTCGAGGTTC TCAATAGAAC CAAGGGAGCT CATGGAACTG GAAGACAGCT
  CTCTGAGGCA AGCTGTTGGG TTTTGATAGC CACAAAGGTT ATATGGTGTC TACAGAGGGC
  TAGGGGTGTG TCAAAATCAG CTAGAAACTG GTGTTGCTTG CAAAGTAGAA GGATGATCTA
  S
  AGAAGGAGAT AGAAGAGATC CAGGCTAGGA TCAGGTAAGG CCATGGCAGT GGGGATGGGA
  AGGACATAAT ATACAGGCAC AAGCTACCGA GCCTTTTGTT GGGCCCTATT TGGCCTTGGT
  TTGGGCTCAA TTTTTGAGAC CCGTCATTCT CCTCCACTTG AGAATGACTC AGCACGACCT
  ACCAACCTGA TTGAGACTGC CTCTGCCTAG CTACTGCTGA TGTAGGCCCC GTGAGATAAC
  CCCACACCCC TCGTCATTTC ACTCCATCAC ATATGTCATC TCACCCCATA TCCCTACCCC
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45424037	mCV24778449	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30377333					SNP	G	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19946809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13006	CpG island 13006	1913 bp proximal
Rr574033	regulatory region 574033	1721 bp proximal