rs30374827 SNP Detail

Summary

• ID
  rs30374827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108713337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATAGATT AAAGGTGTAG
  GAGCTGATAC AGGAAGGTGC CTCTTCTACC ATTTTGAAGT TTCTGGGCAG TGAGAAGAAA
  GGACTTCGGG GATTTGGGTC TTTGTTGAGT ATCTCTTATA GGTACACGTT CATGTCTCTG
  AGACATGGAC TGTGGACGCC ACCTGGTGGT CTGCTCTAGC CATTTTTACA GCATGCTCTT
  Y
  AGGATACAAA GCAAGTCTTA GTTCATCAAG AACACAGAAG TGGGCTGTGG TTAAGACCAG
  AGTTTGGTTC CCATCACCAA TGTCAGTTAC TTCCTGTAAC ACTGCGGATT CTGTTCCCAG
  CACTGACACA GTGACTTACA GCTATCCAAA CTTCTAGTTC CAAGGGACCT GACCCCTCTT
  TTCAAACCTT CTATGGCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45922930	mCV24655375	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
ss51809930	NES14773131	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	T	T	T		T	T	C	T		T
ss133508246	ENSMUSSNP3081298	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
ss321893937	CHEV_6_108686370	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30374827					SNP	T	T	C	C	C	T	C	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51809930	NES14773131	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108713337 () rs orientation: forward

Symbol	Name	Function Class
Rr636189	regulatory region 636189	within coordinates
Rr636190	regulatory region 636190	27 bp distal
Rr636191	regulatory region 636191	1943 bp proximal