rs30373640 SNP Detail

Summary

• ID
  rs30373640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53399498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTTCCTA GCATCCACAC
  GGTGATTCAC CAGTTCCAGG GCATTTGGCG CCCTCTTCTG GCCTCCTCAA GCACAGCATG
  CATGAAGGCA AACAAACACT CATACACATA AAATAAAAAT AAATTAAACC TTTTTTGGAA
  AAAAAACAAT AAAAAGCATC AAACTATTTG AAAAATTAAG AACCACTATA TTTTCACAAC
  Y
  CAGAAACACG TGTTTTGATT TTCTTCCAGA ATTCTTTTTA TGCATACATT TGTAGTAATT
  GGTATCCCAT TAGCCAAATA GTTTTATGCC AGGCCATTTT TTCCTATTAA AGTCCTATAA
  TAATTCTCAC ATAATTTTAT AAACTGTGAA AACGTATGCA TGCAGGCTGG GCATGCATCT
  CAATGGACAG AGTGTGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46941851	NES10799603	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30373640					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46941851	NES10799603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53399498 () rs orientation: forward

Symbol	Name	Function Class
Rr576707	regulatory region 576707	57 bp distal
Rr576708	regulatory region 576708	135 bp distal
Stoml3	stomatin (Epb7.2)-like 3	Intron