rs30373179 SNP Detail

Summary

• ID
  rs30373179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:3603743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAATTGATA TGCTTTCATT TTTAATTGTA TTATCATCTA
  TCATTCCTTA AAGAATCAAT ACTTTTCTCA ATAAACATAA AATTTGCCCC TACTATAAAT
  Y
  GTACCTTCTT TTTCAATACT ACTAACTGTG GTGACAGCTA AAGAATACAA ATATGGCATA
  GTTATAAAAG TGTTAGAGAA GTAGCTCAGA GATAGAGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39675666	mCV24131638	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		T
ss50588956	NES13656362	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C		C	C		C	T	C	C		C
ss146002911	ENSMUSSNP4465235	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
ss325715246	CHEV_19_3553743	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30373179					SNP	C	C	T	T	T	C	T	C	C	T	C	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50588956	NES13656362	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3603743 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp6r3	protein phosphatase 6, regulatory subunit 3			Intron
				Noncoding-Transcript-Variant
Rr542430	regulatory region 542430			1720 bp distal
Tssr157396	transcription start site region 157396			1150 bp downstream