rs30372692 SNP Detail

Summary

• ID
  rs30372692
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53399039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCGTGCC CAGGGGTGGA
  GTCATCAGGT TGAAACCAAG TTGAGCGTCT GTGTACCTTT TGGCAAATTT ATAGTTCACT
  TAAAATTGTT CTTTGGTGAA AGCTCTTTGC CTGCTTGGGA GGAACAGACA GGCAGGAAAG
  ATGAGTTATA GTTGCTAAAA AATAGTGTTA TCTTTAGGGT TTTACGCTGA ATTTTATATC
  W
  GGTGCCTGAA GGCTGTGCTT TTCTACAGAA AGAGCCTAGA GGCTACCCGA GTTCCATTTT
  ACCCACTGTG TCTTAACAGG ATAGGAAGCA AAGGAGAGAG GGAAGGGTAA AGAGAGGAGG
  AGGAAGAACA TTTAATAGTC GTGAATTTTT TATTTAAAAA TTTCTTTATA AAGGCATAAA
  TATATGTAAA ATTAAGTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46941842	NES10799999	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30372692					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46941842	NES10799999	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53399039 () rs orientation: forward

Symbol	Name	Function Class
Rr576707	regulatory region 576707	189 bp proximal
Rr576708	regulatory region 576708	303 bp proximal
Stoml3	stomatin (Epb7.2)-like 3	Intron