rs30372689 SNP Detail

Summary

• ID
  rs30372689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53399024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTAATA GGATGTGACC
  GTGCCCAGGG GTGGAGTCAT CAGGTTGAAA CCAAGTTGAG CGTCTGTGTA CCTTTTGGCA
  AATTTATAGT TCACTTAAAA TTGTTCTTTG GTGAAAGCTC TTTGCCTGCT TGGGAGGAAC
  AGACAGGCAG GAAAGATGAG TTATAGTTGC TAAAAAATAG TGTTATCTTT AGGGTTTTAC
  R
  CTGAATTTTA TATCAGGTGC CTGAAGGCTG TGCTTTTCTA CAGAAAGAGC CTAGAGGCTA
  CCCGAGTTCC ATTTTACCCA CTGTGTCTTA ACAGGATAGG AAGCAAAGGA GAGAGGGAAG
  GGTAAAGAGA GGAGGAGGAA GAACATTTAA TAGTCGTGAA TTTTTTATTT AAAAATTTCT
  TTATAAAGGC ATAAATATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46941839	NES10799997	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	A	G	G	G	A		G	A	A	G		G
ss320768463	CHEV_3_53295525	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30372689					SNP	G	G	A	A	G	A	G	G	G	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46941839	NES10799997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53399024 () rs orientation: forward

Symbol	Name	Function Class
Rr576707	regulatory region 576707	204 bp proximal
Rr576708	regulatory region 576708	318 bp proximal
Stoml3	stomatin (Epb7.2)-like 3	Intron