rs30371740 SNP Detail

Summary

• ID
  rs30371740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115986042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG TTACTGGGAG TTGATCTGAA
  Y
  CCAGGTCCTC GGAGGAGCAG TAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	SM/J
ss45923266	mCV24116213	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss48060319	NES11870656	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	C	C
ss133574482	ENSMUSSNP4844974	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321917109	CHEV_6_115959099	CHEVERUD	SCREENING_POP	f	SNP							T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	SM/J
rs30371740					SNP	T	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48060319	NES11870656	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115986042 () rs orientation: forward

Symbol	Name	Function Class
Gm53336	predicted gene, 53336	within coordinates
Rr637132	regulatory region 637132	1637 bp distal
Rr637133	regulatory region 637133	784 bp distal
Rr637134	regulatory region 637134	258 bp proximal
Rr637135	regulatory region 637135	809 bp proximal
Rr637136	regulatory region 637136	1369 bp proximal
Rr637137	regulatory region 637137	1644 bp proximal