rs30370306 SNP Detail

Summary

• ID
  rs30370306
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8947648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG GAGAAACTCT AATGCTCGTT
  W
  AAAATCCCAA TTCTAATTTG GTGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J
ss45923387	mCV24757276	ABI	CRAMUS_MOUSE	f	SNP	A	A			T		A
ss51545586	NES14860422	PERLEGEN	MM_PANEL2	f	SNP			T	T		A
ss132976311	ENSMUSSNP1129875	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					A
ss321738440	CHEV_6_8897648	CHEVERUD	SCREENING_POP	f	SNP								A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J
rs30370306					SNP	A	A	T	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51545586	NES14860422	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8947648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17155	CpG island 17155	500 bp proximal
Nxph1	neurexophilin 1	783 bp upstream
Rr626455	regulatory region 626455	476 bp proximal
Rr626456	regulatory region 626456	981 bp proximal
Rr626457	regulatory region 626457	1538 bp proximal
Tssr54925	transcription start site region 54925	779 bp upstream
Tssr54926	transcription start site region 54926	922 bp upstream
Tssr54927	transcription start site region 54927	960 bp upstream
Tssr54928	transcription start site region 54928	1267 bp upstream
Tssr54929	transcription start site region 54929	1303 bp upstream
Tssr54930	transcription start site region 54930	1404 bp upstream