rs30369490 SNP Detail

Summary

• ID
  rs30369490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72280228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG GCACACACCT GTAATCCCAA
  Y
  GGGACGTAAA CCTGGTATGG CAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45923043	mCV22350924	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss133283781	ENSMUSSNP2003358	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			C
ss321821403	CHEV_6_72253238	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30369490					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72280228 () rs orientation: forward

Symbol	Name	Function Class
Rr632125	regulatory region 632125	350 bp distal
Rr632126	regulatory region 632126	876 bp proximal
Sftpb	surfactant associated protein B	1366 bp upstream
Tssr57078	transcription start site region 57078	1059 bp upstream
Tssr57079	transcription start site region 57079	1075 bp upstream
Tssr57080	transcription start site region 57080	1348 bp upstream
Tssr57081	transcription start site region 57081	1382 bp upstream
Tssr57082	transcription start site region 57082	1796 bp upstream
Tssr57083	transcription start site region 57083	1824 bp upstream