rs30366018 SNP Detail

Summary

• ID
  rs30366018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100689069 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  CCTCTGTTGA GGGACATCTG GGTTCTTTCC AGCCTCTGGC TACTATAAAT AAGACTGCTA
  TGAACATAGT GGGGCATGTG TCCATATTAC ATGTTGGAGC ATCTTCTGGG TATATGCCCA
  GGAGTGTTAT AACTGGGTCC TCAGGTAGTA CTATAACCAA TTTTCTGAGG AACCACCAGA
  CTGACTTCCA GAGTGGTTGT ACCAGCTTGT AATCCTACCA GCAATGAAGG AGTGTTCTTC
  TTTCTCCACA TCCTCGACAG CATCTGCTGT CACCTGAGTT TTTGATCTTA GCCATTCTGA
  Y
  TGGTGTGAGG TGGAATCTCA GGGTTGTTTT GATTTGCATT TCCCTGATGA CTTAGGATTT
  CTTTAGGTGC TTCTCAGCCA TTCGAGTTTC CTCAGTTGAG AATTTTCTGT TTAGTTCTGT
  TCCCCATTTT TTAAAATAGG GTTATTTGTT TCTCTAGAGT CTAACTTATT AAATTCTTTG
  TATATATTGG ATGGATATTA GCCCTCTATT GGATGAATGG TTGGTAAAGA TATTTTCCCA
  ATCTGTTGGT TGCCATTTTG TCCTATTGAT AGAGTCCTTT GCTTTACAGA AACTTTGCAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45422282	mCV22835946	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss131781333	ENSMUSSNP2073895	ENSEMBL	ENSEMBL_Sanger	r	SNP		A		G
ss135211169	ENSMUSSNP5771379	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30366018					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100689069 () rs orientation: reverse

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	1836 bp proximal