rs30365546 SNP Detail

Summary

• ID
  rs30365546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95035560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTG GCCCCTTCCC CTAACCCTAA
  Y
  ACAAGTCCCT ACCACCCAGG CGGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45423598	mCV24559784	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss135510044	ENSMUSSNP2560426	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss320841127	CHEV_3_94932171	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30365546					SNP	C	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95035560 () rs orientation: forward

Symbol	Name	Function Class
Rr580821	regulatory region 580821	933 bp proximal
Scnm1	sodium channel modifier 1	1470 bp downstream
Tmod4	tropomodulin 4	Intron
Tssr30496	transcription start site region 30496	2000 bp downstream
Tssr30497	transcription start site region 30497	789 bp downstream