rs30364869 SNP Detail

Summary

• ID
  rs30364869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152657314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACTCGTA CCTGAGGGGC
  ATTCAAAGAG ACTTCTCTAG TAAATACTTG ACATATGGAT CTGTAGCTCA GGAGAGAGGC
  CCATGGTCAA GAAAACGACA AATTCCTTTC ATTAACCGGA TATGCATCTA AAGAAAGATA
  TCGGATGAGA CACACCCAGT TTCCCAACAC AGTTTCTATC TTTGAAAGAT ATTCTTGGCT
  Y
  CAGCTGCCAA TCAGAAGTAC CACCATGTGA GTCTTCTCAG ACCCACACAA AAAACGATCC
  CAACCTGGTG GGACAGCTCT CTACTTAACG CAGGTTTTCC TCTAAAACTT GACACTGATT
  GCCATTCATT CTCTTCTCCC CTCTTAGACA GGCTTTCAAG AATAATTATC TGATCAGGAA
  GTTCAGAAGT TCAGCTATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45423692	mCV24026529	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss136105131	ENSMUSSNP3276712	ENSEMBL	ENSEMBL_Sanger	f	SNP		T			C
ss321029352	CHEV_3_152614641	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30364869					SNP	T	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152657314 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587634	regulatory region 587634	1087 bp distal
Rr587635	regulatory region 587635	551 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron