rs30364775 SNP Detail

Summary

• ID
  rs30364775
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17752334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCTACC TGGAAGGAGA
  TACAGAACAT TTCAGTTTCC TCAGGAGGAA TTATGGCCTT CCGATTCATT ATTCTTGCCA
  AGTGATAATT ACCATTCTGA TTCGAGACTT CCCAGACTCA TGTTAATGAA TCTTTTAAAT
  TTTCTTTCTT GCTTTCTTGT TTTTTACATA TAAGACAATG GAACACATCT GAATTTTTAA
  S
  TTGGTGAATA TATAGTTAAG TTGATTTTAT ATCTTATATT TTTGAAGTCA GGTGTCTCTA
  GTGGCCTGGG TTCTACATTG TTATATTTCT ATCTCATCAA GTATTTGCTT ATCTTAAATA
  ATTCTCTCTC TTAAACACCC CCAAATAAAA AAGAAAGTAC ATAGCCTTTT TTTCAATTTT
  TTATTAGATA TTTTCTTCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45921030	mCV22806836	ABI	CRAMUS_MOUSE	f	SNP	G	C						C
ss47815196	NES11711898	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C	C	C	C	G	C	C
ss133022013	ENSMUSSNP5090543	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30364775					SNP	G	C	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47815196	NES11711898	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17752334 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr626854	regulatory region 626854			1505 bp distal
Rr626855	regulatory region 626855			654 bp distal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant