rs30364228 SNP Detail

Summary

• ID
  rs30364228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56545604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAACCTC AGCGAGGAAA
  TCGGTATAAT TGAAAACCGA TTTCAGCAGG ATGCCAGCTA AAGCAATAGA GTAGCTGGAA
  CAAGCCACAC TCCAGCTTCC CCGCCAGCAG GTCACGGTTT CCAGCGGCTC CCTCCAGCCA
  GCACCCTCCA ACCCAGATTT CCGTGCCCAC CCTCTCCCCG TTAGAATCTG CCACTGTCAC
  Y
  GTCACCGCCA CTGTCGTGTG CGAGAACGCC AGGAACGGCC GGGGTGCAAA GTTCTCACCG
  ATGGTGAAGC TGTACCCGTC GATGCTGAAA GTGGCGCTCC TACATTTCTT GAAGCCCTCT
  TTCTTGTGGC TGGTGTCCGT CATGACTCCT GCGTTCCCGG TCCTGGCTTG AGCCCGCGCC
  CAGCCTCCCT TCGCTGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45922824	mCV25430906	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30364228					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56545604 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17476	CpG island 17476			within coordinates
Gm66600	predicted gene, 66600			4 bp upstream
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631075	regulatory region 631075			within coordinates
Rr631076	regulatory region 631076			474 bp proximal
Tssr1858	transcription start site region 1858			532 bp downstream
Tssr61134	transcription start site region 61134			302 bp downstream
Tssr61135	transcription start site region 61135			323 bp downstream
Tssr61136	transcription start site region 61136			489 bp downstream
Tssr61137	transcription start site region 61137			564 bp downstream