rs30363946 SNP Detail

Summary

• ID
  rs30363946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55549821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTATGTCA TTTTACCCCA
  CCCAAAAGCC CCCTCCCTAT GTTCTGAATT TGTATAAGTG AGAGGTTGAT GCCATAGAGT
  TGAATTCCTG CTTCGACAAG ACTCCTGGCT CGGTGTGTTT CTTTTGGGCT GTAGACACTC
  ACCATCCCGC TCAGCCCCGG AGAGACCCTG GCAGGTCCGG GATCTCTCTC CTCTCGCCTG
  R
  ATCTGCCAGC AAGAAGCCAG CATACTGGAT TTTCAAGAAG GCAGAGGTTA TACTTAGCAT
  ATAGAAAGTC TGAGCTTTTT CTAGGCATCA CTGCTAGAGC AAGGGGGGCA TCTGGGTGTT
  GGGGACAGCA GCTGAGGGGA TCAGTCAGAG GTCATCATGA GAAGACTGGG GACTCTCCCC
  AGGCCAGAGG TCTTAGTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
ss45422758	mCV22825558	ABI	CRAMUS_MOUSE	f	SNP	A				G
ss60413537	NES15908321	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G	A	A	A
ss135189227	ENSMUSSNP438414	ENSEMBL	ENSEMBL_Sanger	f	SNP	A				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
rs30363946					SNP	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60413537	NES15908321	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55549821 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576982	regulatory region 576982			1639 bp proximal