rs30363349 SNP Detail

Summary

• ID
  rs30363349
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119094243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACTGCCT CTGAACACCA CATAGGATGC TAAGCTGGAG
  GGAGAAAGCC AAGTCCTTAA GACCTTGACC TGTATGTGAA CACTCAGGAA ACCAACACCT
  S
  TGGCTCCTCC TTCCCACTCT GTCTTCTGTC CCCAACATGA TCTAAAGCAA TTTACCTCCC
  TTGTCAAGGA TTTGTATCTC CTTGATATTG TTGCTGAAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45922212	mCV22292884	ABI	CRAMUS_MOUSE	f	SNP		C	C					G		C
ss48073603	NES11880619	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C		G	C	C	G	C	G
ss133587715	ENSMUSSNP4282863	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30363349					SNP	C	C	C	C	C	C	C	G	C	C	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48073603	NES11880619	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119094243 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637595	regulatory region 637595			782 bp distal
Rr637596	regulatory region 637596			1272 bp proximal