rs30362103 SNP Detail

Summary

• ID
  rs30362103
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151908253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACCTCC AACATCATGC
  ACGACACGCA CACGCACTTA ATAAAAATTA AACATGCAGT CTTTTTGTTA ACTGGACTAC
  AGTCAGTTTA TCAATACAAC ACTTATGATA CCCCACTAGA TTAGATCATT GTCTGCATTG
  TGAAGGATAA ACTGAATAGA AGGCACACAG CCACTGGCCC ACAAGGTTTC CACTGTAAAT
  W
  CATAAGGAAC TTGCTATCAT TCCTCTCACC AGATAGTGGT AGAAAGTTAA ATCCAGGGCT
  GATGGCCAAT AATGCCTAAA ATATGTACTG ACTGGACATT AATGGAAAAT GCTTGCTGAC
  CCCCATAATA TACAAGATAC TCCTCATAAA AGGACTTTTT AAAAGCACTA AACAAAAACC
  CTGCTTTTTG CAAAATTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45422347	mCV23509254	ABI	CRAMUS_MOUSE	f	SNP	A	T	T	T
ss136101336	ENSMUSSNP596653	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		T
ss321028387	CHEV_3_151865580	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30362103					SNP	A	T	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151908253 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			within coordinates
Rr367578	regulatory region 367578			1400 bp upstream
Rr587487	regulatory region 587487			1141 bp distal
Rr587488	regulatory region 587488			657 bp distal
Rr587489	regulatory region 587489			1442 bp proximal
Rr587490	regulatory region 587490			1870 bp proximal