rs30361335 SNP Detail

Summary

• ID
  rs30361335
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90050080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGAGCTT GCAGAGGCGG
  GCAAAAAAGA GGATAGTGTT AGCTGAGATC CCAACACTCA CTTCAGAGAA CAAGATGATT
  TTCATGTTAT TGTCAGTGTG GAGTAAGTTT GCTTTACTCA TTGTATGTAG GTAGGAAGCA
  AATAACAAAA ATCTGAGGAG AAAAGAGAAA ACTCTTTCTT ACAAAACATG GCCTTGTTCA
  M
  AAATGCCAAC CAACACTGAG ATGGCAAGAA GGTGTCCACT CATCCTGATT CCAACTCACC
  AAATTCAGCT CCAGTTCACA CTACCTGAAA GCCATCCCCA CTGTTCCCAT TGTCCTAATG
  CTTCCCAATC AGTGCTGAAT TCTTTGTACC AATTTAGGGC TACTTCCAAG TATAAACTTT
  CTTGTATACT GAACATTTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45922186	mCV24613553	ABI	CRAMUS_MOUSE	f	SNP	C	C	A				C
ss48002913	NES11895986	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C		C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30361335					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48002913	NES11895986	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90050080 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Vmn1r49	vomeronasal 1, receptor 49			Intron
				mRNA-UTR