rs30360818 SNP Detail

Summary

• ID
  rs30360818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116761431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTACAGC TAATAACGAT
  AGATGACCAG GTCAGGGACT TCCAGGTTAT CGTCACATAC AGCAGTTTGG AAGCAAATGA
  GAAAAAGAAT GGTATCATTT AAGAAAAGTG ACTCATTTCT TGCTTTGATT TTTTTTTTCC
  CCAGAACAAA CATCAAGTGT ACTACTTTTC TTCCCGGAAT TAGGGAAATA TTTTCCAAGT
  Y
  CATCTTGTGC ATGGCTCCTG TATTGAGACC TTATTCGGAC TATGTCTGTC CTTCTGTACT
  GGAAAACTGA TCTGCGAGAA TTACTCTGAT GCGTGCCTTC GCTACTTTTC TTCTGTTTTA
  ATACTTCGCA TATATATATA TGCATACATA CATACACCAA GCTTTGCTTT AATTCAGTTA
  GGTTTGTCTG GAATATACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45423401	mCV23494734	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss135676614	ENSMUSSNP1414584	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30360818					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116761431 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			485 bp upstream
Cpgi13743	CpG island 13743			811 bp proximal
Gm52613	predicted gene, 52613			within coordinates
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			1147 bp distal
Rr583815	regulatory region 583815			578 bp distal
Rr583816	regulatory region 583816			975 bp distal
Rr583817	regulatory region 583817			395 bp proximal
Rr583818	regulatory region 583818			1066 bp proximal
Tssr35360	transcription start site region 35360			756 bp downstream
Tssr35361	transcription start site region 35361			781 bp downstream
Tssr35362	transcription start site region 35362			846 bp downstream
Tssr35363	transcription start site region 35363			894 bp downstream
Tssr35364	transcription start site region 35364			930 bp downstream
Tssr35365	transcription start site region 35365			990 bp downstream
Tssr35366	transcription start site region 35366			1008 bp downstream
Tssr35367	transcription start site region 35367			1045 bp downstream
Tssr35368	transcription start site region 35368			1146 bp downstream
Tssr35369	transcription start site region 35369			1187 bp downstream
Tssr35370	transcription start site region 35370			1230 bp downstream
Tssr35371	transcription start site region 35371			1732 bp downstream