rs30359032 SNP Detail

Summary

• ID
  rs30359032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105865445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA GCAGGGCTGG CATTAACAGT
  R
  CATAAAAAAA GACCCAAGAC ACAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45422709	mCV23787032	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	A
ss135578771	ENSMUSSNP5198048	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30359032					SNP	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105865445 () rs orientation: forward

Symbol	Name	Function Class
Atp5pb	ATP synthase peripheral stalk-membrane subunit b	Intron
Cpgi13663	CpG island 13663	646 bp proximal
Gm42890	predicted gene 42890	1374 bp upstream
Rr582821	regulatory region 582821	750 bp proximal
Rr582822	regulatory region 582822	1615 bp proximal
Rr582823	regulatory region 582823	1960 bp proximal
Tssr997	transcription start site region 997	1070 bp downstream
Tssr31092	transcription start site region 31092	1281 bp upstream
Tssr31093	transcription start site region 31093	1324 bp upstream
Tssr34944	transcription start site region 34944	1083 bp downstream
Tssr34945	transcription start site region 34945	1123 bp downstream
Wdr77	WD repeat domain 77	1369 bp upstream