rs30357256 SNP Detail

Summary

• ID
  rs30357256
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79383862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTAAACT GTTAGCAGCT
  GGGTAACATG CATCAGGAGG AAAGAATTCA AATGTCAGAC TGAAAAACAG CATGTGTCAC
  ACACCGAGAA AACCTGGGTC CTAGTATTTA AAAGGCAATG AAAGCCAGGA AAGTAAACAG
  TAAAAGTTTT GTAAGAGACT AGGATTTAAA AAAAAAAGAA TGAAGATACT CTTGATGCTG
  R
  ATGTTCTAGG AAGAAATTTC CTTGTGCTCC AAAGAAAACT AGTCTGCTAA GATTATACAA
  TGCACATTTA TAAAGCCAGA TTGTATAACC TAAATCATGC ATGAGTCAAA AAAAAAGATC
  AATAAGTTAC AACAATTGTT TTTTACAAAG TTATTCAAAA TCCTTCTTGA AAAGGAATTA
  CAAGTCCCAA AGTCTGGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45420255	mCV24555313	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G
ss47030808	NES10777770	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	G	A	G	G	A	G
ss135372206	ENSMUSSNP4008940	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30357256					SNP	A	A	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030808	NES10777770	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79383862 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr578524	regulatory region 578524	1114 bp distal
Rr578525	regulatory region 578525	234 bp distal
Rr578526	regulatory region 578526	1920 bp proximal