rs30356936 SNP Detail

Summary

• ID
  rs30356936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:145641850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAACCA ACCAGTTTAT
  CCCAGCCCAT GTTACCTTTA GTTAATCTGC CCTTTATTAA TAATTAATAC AGGTCCATTG
  TAGACAGCTT ACATCTTTTA TAGTGGGACT TTCTCAGATC CACCAATAGT ATAAATAAGG
  ACATGAGACT TCTAATATAG CTTAAAGCTT AGGCCTTTTC CTAGGGCAGT CTCCCGCTAG
  Y
  TCATCTGACT TAACCTGACA CTTGCCGACA ACCTGCCACT TGGCTCATGC TGTGCCCTTC
  TCCCTGTGGT CCCCTTTCTG TACCTACTCT GCAGTCTCCA GTCTCCTCTC TTACCCTTCC
  TTATTCTCTC TCGAGTTTAG CTTTTGTAAA AAATAAAAAA TTTTTGTTAC TTTAGTTTTT
  AGGAACCCAT TGCTATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45421246	mCV24197868	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss136040807	ENSMUSSNP2293079	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321009170	CHEV_3_145599059	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs30356936					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145641850 () rs orientation: forward

Symbol	Name	Function Class
2410004B18Rik	RIKEN cDNA 2410004B18 gene	1919 bp upstream
Bcl10	B cell leukemia/lymphoma 10	1729 bp downstream
Cpgi13909	CpG island 13909	1789 bp proximal
Rr398107	regulatory region 398107	1833 bp downstream
Rr398108	regulatory region 398108	1738 bp upstream
Rr586873	regulatory region 586873	1429 bp proximal
Rr586874	regulatory region 586874	1854 bp proximal
Tssr32317	transcription start site region 32317	1909 bp upstream