rs30356472 SNP Detail

Summary

• ID
  rs30356472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53154407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCAGAC ACTAATCTCA
  GAGAATGTTC ACATTCCTTA TTGAAATTGG TGTAGCATCC TCATGTAGCC TCCCTACAGT
  TTCCTGTGCA TTTAATTTCC TCTCCAGTTG ACTTACAATA CCTGCTCCAA TGTAATAACC
  CTGCTAGTAC GCTATGAGGG GATAAGGGCA GAAACAGTGT ACACACATGT TCACTGCAGA
  Y
  ACCACATTGC AGGTAAGGAG TACCTTGATT TTCAGTTAAA TCAAATCTAT GTTTCAAAAA
  TCCGTAGATA CCAAGGTCAG ACACGATGTC CAGATGACCT AGTTTGATGA TGAAAGATGG
  TGGTGGTTTA TTTATAGCCC CACCCCCAAC TTATACTTAT TTGCTTTGAG CATGTGAAAT
  TACTTTAAAG AATGAAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46940112	NES10805645	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30356472					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46940112	NES10805645	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53154407 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576667	regulatory region 576667			1198 bp distal
Rr576668	regulatory region 576668			198 bp proximal
Rr576669	regulatory region 576669			302 bp proximal