rs30355694 SNP Detail

Summary

• ID
  rs30355694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119685789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGGTGA TGTCTAGAAG
  CAATTTATTC CAGGAAACCA TGTAGGCTGA TACAAGCCAA GGCTTTGTCA CTCCTCGAGG
  AAGAAAGGGG AGAGAAGAAA CTGGACAGAG GTAAACCCAC TGAACACAGG AAGTAGAAGG
  GTAATGTTTT CGTTTTCTTC TTTCCAAAGT TACAGTGAGG CCTCCAGCTC CTTTGGCCTG
  R
  GTTCTATGGT TCACCCACAC CCTCCCATAT TTTAGTAAGT CACTATATTT GGCTTTATGT
  GTTTCCACAC TCTGCTGCTA CACATTAGCT TCACCATCTA TTTAAGAATA AAATTCAATT
  ATATCATCTA CTACAACTCT TGGAAATAGT CTCACTGAGA CACTGACAAA GCTCCTGAAA
  CAAACTGTAA AGGTTGATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45421029	mCV23482236	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss51014984	NES13913119	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A		G	G	G	G	G	G	G
ss135699621	ENSMUSSNP4747241	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30355694					SNP	A	A	A	G	A	A	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51014984	NES13913119	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119685789 () rs orientation: forward

Symbol	Name	Function Class
Gm66375	predicted gene, 66375	within coordinates
Gm66384	predicted gene, 66384	1247 bp downstream
Rr583949	regulatory region 583949	744 bp proximal
Rr583950	regulatory region 583950	1979 bp proximal