rs30354470 SNP Detail

Summary

• ID
  rs30354470
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151271408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCTTGGT AGATACAACC
  AGCAGTGTCC ATAACGGTTG AGACAACCCA CCTAGAGGAA GGAGAGGAAA GGGAGGGGAG
  GGGAGGGGAG AGGAGGGGAG GGGAGGGGAG GGGAAGGGAA GGGAGAATCT TCTAGGTTTG
  TGGGTCAGGT GATCTCCCAG CTGTCAAAAC TCTTCCGATG ATATTCTGGC TAAGGACCAA
  R
  GCAGAGCTAT CCTTGAGAAC CTGCTCCTTG CTGTAGTACA GCTCTCATTC ACGGTTTGCT
  TCTGTGCCTG GGGCATTCTG GGAAGAGCCT GATTTCACCC TGCCAAAGTC TAGCAGCTTC
  AGGTCCACGT GAATCGTGAA TCGCAAACAC CGGAGAGCAA TCAGAAATGC CCAACAGCCC
  TGCCGCATGA AACCAAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45419634	mCV23272553	ABI	CRAMUS_MOUSE	f	SNP	G	A			A	A
ss61101148	NES16603273	PERLEGEN	MM_PANEL2	f	SNP	G		A	G		A	A	G		A	A
ss321026065	CHEV_3_151228735	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30354470					SNP	G	A	A	G	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101148	NES16603273	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151271408 () rs orientation: forward

Symbol	Name	Function Class
Rr587404	regulatory region 587404	within coordinates
Rr587405	regulatory region 587405	837 bp proximal
Rr587406	regulatory region 587406	1086 bp proximal