rs30354257 SNP Detail

Summary

• ID
  rs30354257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53131384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGAGCT GAAGTGCTTG
  TAGCCCAGGG CTGGGAAGCT GATGCCTTGG CTTGCCTGAC AAGTGTCACC TGCAAATGGC
  AGTACCCGCC ACACTCTCAT CATCAGAAAC AACTTGTTTT CTCTGTACCC GAGATTGCCT
  GGGACCCTGG AAAGAGAAAA GATGACAAGC CACTCATGGC TGAAGTTAGC TCCTGAGGTT
  Y
  CTCTGTGCGC TAGGAAGGCA TCCTGGTGCC TGACGCCCTG TATTTGTCTT TTGTGTCTTG
  TGTCACATGA TCTGAAAAAG GAAACGAAAC AAGGGTTGAT GGACCATTTG GAAAAACATT
  TTAAGAAAAC CCAGAGTTGT CTGCAGGATG ATTAAACAAA GAAAGACTGC CTGCGATTAG
  ATCACACATG GGTGTCGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46939419	NES10806997	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C		C	C	C	T
ss320767053	CHEV_3_53027885	CHEVERUD	SCREENING_POP	f	SNP						C					T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30354257					SNP	C	C	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46939419	NES10806997	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53131384 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576663	regulatory region 576663			1700 bp proximal