rs30353568 SNP Detail

Summary

• ID
  rs30353568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53131104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCGTGG TAGGGATAAT
  CCTGCTCAGG CCTTCTCTAT TCTTTCTTGT AAGAAGAGAG AAAGAAAAGG ACACTACCAG
  CATCCTGCCC GTATATATAT GACAGCACAC TCACCACACT CTCCTGTCTG CAGGACAGAC
  TGACAGTTTC CAATTGAGAC CACTCACTGA CTCTCGTGAT CAAGGACTGT GCCACTTCTT
  Y
  ACCAACACCA TCTTATTCGA TCCCTGCCGA TGCCCAAGGC AACGCTCTTC CCTCATTTTG
  TAGCCCCTGG AGAGGTGGCT GATGGAGCTG AAGTGCTTGT AGCCCAGGGC TGGGAAGCTG
  ATGCCTTGGC TTGCCTGACA AGTGTCACCT GCAAATGGCA GTACCCGCCA CACTCTCATC
  ATCAGAAACA ACTTGTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46939410	NES10806994	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30353568					SNP	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46939410	NES10806994	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53131104 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576662	regulatory region 576662			1827 bp distal
Rr576663	regulatory region 576663			1980 bp proximal