rs30353360 SNP Detail

Summary

• ID
  rs30353360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108043673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACA CACATAAATT AACTTCTTCA
  R
  ATCCTCAGAA GCCCTAGAGT TTAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45919113	mCV24061037	ABI	CRAMUS_MOUSE	f	SNP	A	A					G
ss51821966	NES14764693	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A	A	G		A	G	A	A		A
ss133494244	ENSMUSSNP4556219	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321891482	CHEV_6_108016706	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30353360					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51821966	NES14764693	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108043673 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	1730 bp upstream
Rr399804	regulatory region 399804	1519 bp downstream
Rr399805	regulatory region 399805	1212 bp downstream
Rr399806	regulatory region 399806	692 bp downstream
Rr636028	regulatory region 636028	1741 bp distal
Rr636029	regulatory region 636029	1657 bp distal
Rr636030	regulatory region 636030	1393 bp distal
Rr636031	regulatory region 636031	888 bp distal
Setmar	SET domain without mariner transposase fusion	Intron
Tssr58052	transcription start site region 58052	1659 bp downstream