rs30352289 SNP Detail

Summary

• ID
  rs30352289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130552632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT TTTCTAACAA ATAAAGCCTC
  R
  ATTGAGAGAG CCTGGGTGGG TGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45419412	mCV22960160	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		A
ss61080248	NES16598326	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	G	A		G	A	A	A		A	A	A		A
ss135899332	ENSMUSSNP2312594	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								A
ss320966484	CHEV_3_130461901	CHEVERUD	SCREENING_POP	f	SNP													A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30352289					SNP	A	A	G	A	G	G	A	G	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080248	NES16598326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130552632 () rs orientation: forward

Symbol	Name	Function Class
Gm42997	predicted gene 42997	within coordinates
Gm43522	predicted gene 43522	1307 bp upstream
Gm43524	predicted gene 43524	1225 bp downstream
Gm65129	predicted gene, 65129	within coordinates
Rr585206	regulatory region 585206	within coordinates
Rr585207	regulatory region 585207	1711 bp proximal
Rr585208	regulatory region 585208	1942 bp proximal