rs30351552 SNP Detail

Summary

• ID
  rs30351552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7732305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAATAAA ATGTCCTTCC
  CTGTTCCCGA GAGTCCTAAA ATGACATACA CTGTTGAATC TTGGTTTGAC TTGGGTTGAA
  GCCCGTAAAT GTCTAGGGGA ACCCTTCGGG CTGATGAGAG TGGCAGTGTG AGTCTGGGTG
  TCTGTCCTAT CACTGTTGAC ATAATGTAAA GCTTTGTTTT CTATGGTTTC CATTATCTAA
  Y
  CTCTCCACAC GCTATCTTTG GAAACCTACA GTACTTTCTG TCATCTTCTC TTGCTGCTTT
  GAGGGAGAAC TCCTGGAAAG AAGCGGTCTG CAGAGACTGA CTGACTAATG TCAGTCCTGT
  GGGGGTGGGG GTGGGGGTGG GGTGGGGGTG GGGGTGGGAA TGTTACAGGT CCAACGGCTA
  CTTAGTTTAT CTTAGGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45919035	mCV24779792	ABI	CRAMUS_MOUSE	f	SNP		T	C		C
ss47785476	NES11723924	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30351552					SNP	T	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47785476	NES11723924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7732305 () rs orientation: forward

Symbol	Name	Function Class
Rr626314	regulatory region 626314	within coordinates
Rr626315	regulatory region 626315	672 bp proximal
Rr626316	regulatory region 626316	932 bp proximal