rs30350884 SNP Detail

Summary

• ID
  rs30350884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:96014893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGA ATTTTTAAAT TCAGTTCACT
  Y
  TTTAATAGAT AATAGAAGAG AGAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45420585	mCV24943143	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss135513868	ENSMUSSNP1984519	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320841463	CHEV_3_95911504	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30350884					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96014893 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Otud7b	OTU domain containing 7B			Intron
				Noncoding-Transcript-Variant
Rr581152	regulatory region 581152			1668 bp distal
Tssr30681	transcription start site region 30681			940 bp upstream
Tssr30682	transcription start site region 30682			953 bp upstream
Tssr30683	transcription start site region 30683			988 bp upstream
Tssr30684	transcription start site region 30684			1007 bp upstream