rs30349696 SNP Detail

Summary

• ID
  rs30349696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53132886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTTCCC ATCGAATATG
  TCTCCTTTCC CTGCTTTCCA CAGTGAAGTT GGCTCTCGAT TGGCTTGCTG AGGATCCTTG
  GTGACCAAAG CTGACTTAGG TCACAGGCTG TGATCCCCCA ATTCAATAAC AAAATTCTCT
  TATCAAAGAG AAAGAACCCA ACTTTCAGAA AAGCGAAGGT CTCAAGACAG AGAGCCAGTG
  R
  TGGATGCAGT AGTCCGGGAT CTCCGGGGCA CCACGGCTAG TTAGCAGTAG ATAAGATATT
  GGGAGAGAGA GATATTCAGA TAGGGCCAAA GCCACCATGT CCCTGTTTGA CCTCATGCTG
  TGCATGTGGC TTGAAGTGGA CTCATGTCCA ACCACTGAGA TGATAACAGA TAGGAAAGAG
  TCCTGGACTG GGATTCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46939476	NES10807025	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	G		A
ss320767081	CHEV_3_53029387	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30349696					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46939476	NES10807025	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53132886 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576663	regulatory region 576663			198 bp proximal