rs30348783 SNP Detail

Summary

• ID
  rs30348783
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53132859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGCGGG GTCCAGAATC
  TCTCTTCCCC TCTTCCCATC GAATATGTCT CCTTTCCCTG CTTTCCACAG TGAAGTTGGC
  TCTCGATTGG CTTGCTGAGG ATCCTTGGTG ACCAAAGCTG ACTTAGGTCA CAGGCTGTGA
  TCCCCCAATT CAATAACAAA ATTCTCTTAT CAAAGAGAAA GAACCCAACT TTCAGAAAAG
  V
  GAAGGTCTCA AGACAGAGAG CCAGTGGTGG ATGCAGTAGT CCGGGATCTC CGGGGCACCA
  CGGCTAGTTA GCAGTAGATA AGATATTGGG AGAGAGAGAT ATTCAGATAG GGCCAAAGCC
  ACCATGTCCC TGTTTGACCT CATGCTGTGC ATGTGGCTTG AAGTGGACTC ATGTCCAACC
  ACTGAGATGA TAACAGATAG                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46939473	NES10807022	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C		C	C	G		C
ss320767080	CHEV_3_53029360	CHEVERUD	SCREENING_POP	f	SNP								A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30348783					SNP	C	C	C	C	C	C	C	A	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46939473	NES10807022	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53132859 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576663	regulatory region 576663			225 bp proximal